Software

An R package for identifying orthologous nonsynonymous SNP variation across species, enabling efficient comparative genomic analyses anchored to human variant data. 

An R-based toolkit for exploring, visualizing, and analyzing mitochondrial genomic and functional data to uncover patterns in mitonuclear evolution and bioenergetics. 

An R package for detecting and quantifying concerted and convergent evolution among paralogous genes using sequence alignments, gene trees, and species trees. 

An R package for converting dendritic river networks into phylogentic trees, for use as null hypotheses in phylogeographic research.