Software

An R package for identifying orthologous nonsynonymous SNP variation across species, enabling efficient comparative genomic analyses anchored to human variant data. 

An R-based toolkit for exploring, visualizing, and analyzing mitochondrial genomic and functional data to uncover patterns in mitonuclear evolution and bioenergetics. 

An R package for detecting and quantifying concerted and convergent evolution among paralogous genes using sequence alignments, gene trees, and species trees. 

An R package for converting dendritic river networks into phylogentic trees, for use as null hypotheses in phylogeographic research.

A Python / R package for full annotation of open reading frames in circular or linear genomes. 

A modern take on a classic bioinformatic toolkit. NeoEdit ports the best things about Tom Hall's BioEdit into a cross-OS Python environment with QT GUI.

Windows Install

SpeciMap is a mobile application that links field-collected biological specimens to georeferenced photographs and standardized specimen metadata using unique QR codes. It creates a traceable digital record connecting each specimen’s collection location, images, and unique identifier to downstream genomic sampling and analysis.